#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01267/HGDP01267.cram --algo AlignmentStat HGDP/HGDP01267/QCmetrics/HGDP01267.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	442926587	442926587	1.000000	0	442733142	0.999563	66175963468	415339177	62388325822	60961229611	0.000000	0.004887	0.004197	0.000226	151.000000	441213810	0.996568	0	0.499985	0.020993	0.000001	
SECOND_OF_PAIR	442926587	442926587	1.000000	0	441243940	0.996201	64905336768	413021157	61300529770	57830478755	0.000000	0.009432	0.008714	0.000216	151.000000	441213810	0.999932	0	0.499471	0.022223	0.000238	
PAIR	885853174	885853174	1.000000	0	883977082	0.997882	131081300236	828360334	123688855592	118791708366	0.000000	0.007137	0.006436	0.000221	151.000000	882427620	0.998247	0	0.499728	0.021607	0.000120