#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01268/HGDP01268.cram --algo AlignmentStat HGDP/HGDP01268/QCmetrics/HGDP01268.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	404123662	404123662	1.000000	0	403978777	0.999641	60396587453	378236259	56810526311	55489747805	0.000000	0.004974	0.004247	0.000226	151.000000	402383257	0.996050	0	0.499874	0.020875	0.000001	
SECOND_OF_PAIR	404123662	404123662	1.000000	0	402409858	0.995759	59202092743	375903329	55757335796	52441701145	0.000000	0.010087	0.009330	0.000217	151.000000	402383257	0.999934	0	0.499517	0.022188	0.000175	
PAIR	808247324	808247324	1.000000	0	806388635	0.997700	119598680196	754139588	112567862107	107931448950	0.000000	0.007505	0.006765	0.000222	151.000000	804766514	0.997988	0	0.499696	0.021530	0.000088