#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01270/HGDP01270.cram --algo AlignmentStat HGDP/HGDP01270/QCmetrics/HGDP01270.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387067564	387067564	1.000000	0	386871701	0.999494	57823095669	362742909	54482316103	53213831281	0.000000	0.005037	0.004370	0.000239	151.000000	385072714	0.995350	0	0.499980	0.020699	0.000001	
SECOND_OF_PAIR	387067564	387067564	1.000000	0	385104278	0.994928	56494501361	360171903	53308873259	49859486458	0.000000	0.010887	0.010195	0.000228	151.000000	385072714	0.999918	0	0.499516	0.021874	0.000252	
PAIR	774135128	774135128	1.000000	0	771975979	0.997211	114317597030	722914812	107791189362	103073317739	0.000000	0.007928	0.007251	0.000234	151.000000	770145428	0.997629	0	0.499749	0.021285	0.000127