#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01271/HGDP01271.cram --algo AlignmentStat HGDP/HGDP01271/QCmetrics/HGDP01271.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	505229183	505229183	1.000000	0	504755872	0.999063	75552491105	477427519	71745344596	70153310416	0.000000	0.004685	0.004076	0.000224	151.000000	502067265	0.994673	0	0.500009	0.016913	0.000003	
SECOND_OF_PAIR	505229183	505229183	1.000000	0	502106406	0.993819	73900206563	473823433	70256237113	66185518993	0.000000	0.010047	0.009409	0.000215	151.000000	502067265	0.999922	0	0.499531	0.018046	0.000735	
PAIR	1010458366	1010458366	1.000000	0	1006862278	0.996441	149452697668	951250952	142001581709	136338829409	0.000000	0.007336	0.006715	0.000220	151.000000	1004134530	0.997291	0	0.499771	0.017478	0.000369