#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01272/HGDP01272.cram --algo AlignmentStat HGDP/HGDP01272/QCmetrics/HGDP01272.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	388890357	388890357	1.000000	0	388458198	0.998889	58047063807	362178963	54391572345	53010054118	0.000000	0.005168	0.004383	0.000222	151.000000	386885592	0.995952	0	0.499976	0.021150	0.000004	
SECOND_OF_PAIR	388890357	388890357	1.000000	0	386917330	0.994927	56720697754	359823789	53246846115	49844243763	0.000000	0.010624	0.009814	0.000213	151.000000	386885592	0.999918	0	0.499468	0.022443	0.000916	
PAIR	777780714	777780714	1.000000	0	775375528	0.996908	114767761561	722002752	107638418460	102854297881	0.000000	0.007865	0.007069	0.000218	151.000000	773771184	0.997931	0	0.499723	0.021796	0.000460