#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01276/HGDP01276.cram --algo AlignmentStat HGDP/HGDP01276/QCmetrics/HGDP01276.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	504029318	504029318	1.000000	0	503624091	0.999196	75302593015	473641821	71133181232	69560809428	0.000000	0.004579	0.003953	0.000223	151.000000	501596561	0.995974	0	0.500046	0.020415	0.000003	
SECOND_OF_PAIR	504029318	504029318	1.000000	0	501630993	0.995242	73742864359	470666699	69767085837	65756675575	0.000000	0.009487	0.008827	0.000213	151.000000	501596561	0.999931	0	0.499440	0.021840	0.000634	
PAIR	1008058636	1008058636	1.000000	0	1005255084	0.997219	149045457374	944308520	140900267069	135317485003	0.000000	0.007007	0.006367	0.000218	151.000000	1003193122	0.997949	0	0.499744	0.021126	0.000318