#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01277/HGDP01277.cram --algo AlignmentStat HGDP/HGDP01277/QCmetrics/HGDP01277.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	475733649	475733649	1.000000	0	475528961	0.999570	71114377452	447973794	67280936484	65654207744	0.000000	0.004894	0.004274	0.000220	151.000000	473658567	0.996067	0	0.500050	0.018781	0.000001	
SECOND_OF_PAIR	475733649	475733649	1.000000	0	473687045	0.995698	69592316366	445190051	65939493853	61861007644	0.000000	0.010329	0.009691	0.000211	151.000000	473658567	0.999940	0	0.499467	0.020218	0.000271	
PAIR	951467298	951467298	1.000000	0	949216006	0.997634	140706693818	893163845	133220430337	127515215388	0.000000	0.007582	0.006955	0.000215	151.000000	947317134	0.998000	0	0.499759	0.019498	0.000136