#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01283/HGDP01283.cram --algo AlignmentStat HGDP/HGDP01283/QCmetrics/HGDP01283.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375536076	375536076	1.000000	0	375022471	0.998632	55869816553	349040243	52223071008	49826332225	0.000000	0.005723	0.004976	0.000239	151.000000	373484979	0.995900	0	0.497149	0.023076	0.000988	
SECOND_OF_PAIR	375536076	375536076	1.000000	0	373523674	0.994641	55207512167	347243711	51604770269	48459956834	0.000000	0.007549	0.006799	0.000256	151.000000	373484979	0.999896	0	0.497389	0.024098	0.000947	
PAIR	751072152	751072152	1.000000	0	748546145	0.996637	111077328720	696283954	103827841277	98286289059	0.000000	0.006630	0.005882	0.000248	151.000000	746969958	0.997894	0	0.497269	0.023586	0.000968