#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01285/HGDP01285.cram --algo AlignmentStat HGDP/HGDP01285/QCmetrics/HGDP01285.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372666251	372666251	1.000000	0	372393375	0.999268	55576768901	346238020	51894226915	49663451509	0.000000	0.005639	0.004823	0.000242	151.000000	371154880	0.996674	0	0.496957	0.023952	0.000492	
SECOND_OF_PAIR	372666251	372666251	1.000000	0	371183250	0.996021	55061040987	344807950	51420758639	48609161737	0.000000	0.007175	0.006355	0.000243	151.000000	371154880	0.999924	0	0.497132	0.024724	0.000471	
PAIR	745332502	745332502	1.000000	0	743576625	0.997644	110637809888	691045970	103314985554	98272613246	0.000000	0.006403	0.005586	0.000242	151.000000	742309760	0.998296	0	0.497044	0.024337	0.000482