#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01285/HGDP01285.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01285/QCmetrics/HGDP01285.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 16.504 5.909 16 3 0 0.028082 0.0011066 0.04654 0.0093135 8.7531e-05 0.085129 0.99433 0.98188 0.9165 0.64998 0.26636 0.060483 0.011419 0.0026826 0.0013466 0.00075709 0.00048845 0.00034178 0.00025819 0.00020331 0.9852 18 coverage high_quality_coverage_count 0 861898 1 407201 2 409836 3 472753 4 605125 5 820483 6 1184699 7 1739851 8 2554994 9 3645377 10 4987121 11 6548487 12 8189546 13 9752043 14 11064009 15 11957521 16 12332996 17 12163159 18 11497338 19 10403034 20 9071626 21 7616805 22 6164344 23 4814304 24 3649392 25 2681909 26 1916284 27 1337229 28 915287 29 612732 30 408343 31 271700 32 184356 33 128001 34 91597 35 69882 36 55480 37 45800 38 39463 39 34272 40 30712 41 27702 42 24896 43 22600 44 20461 45 18276 46 16396 47 15196 48 13978 49 13006 50 12073 51 11500 52 10475 53 9667 54 9289 55 8673 56 7894 57 7342 58 6624 59 6140 60 5617 61 5110 62 4861 63 4386 64 4012 65 3734 66 3490 67 3376 68 3245 69 3033 70 2898 71 2727 72 2636 73 2476 74 2272 75 2212 76 2036 77 1769 78 1725 79 1559 80 1454 81 1452 82 1440 83 1324 84 1332 85 1293 86 1179 87 1142 88 1081 89 1018 90 989 91 928 92 946 93 884 94 822 95 825 96 750 97 771 98 743 99 691 100 668 101 649 102 669 103 693 104 632 105 647 106 633 107 581 108 566 109 526 110 505 111 500 112 505 113 482 114 506 115 487 116 472 117 491 118 517 119 451 120 484 121 478 122 434 123 420 124 399 125 416 126 389 127 396 128 343 129 331 130 358 131 307 132 319 133 315 134 308 135 306 136 280 137 276 138 265 139 289 140 275 141 263 142 256 143 244 144 263 145 213 146 235 147 254 148 230 149 205 150 210 151 205 152 193 153 213 154 190 155 199 156 193 157 181 158 189 159 143 160 171 161 139 162 131 163 133 164 110 165 110 166 111 167 98 168 111 169 126 170 106 171 100 172 112 173 108 174 125 175 118 176 117 177 111 178 110 179 105 180 108 181 102 182 108 183 126 184 122 185 102 186 105 187 96 188 105 189 113 190 90 191 92 192 109 193 94 194 96 195 73 196 89 197 84 198 98 199 92 200 93 201 70 202 65 203 107 204 76 205 50 206 70 207 51 208 69 209 67 210 58 211 50 212 57 213 65 214 53 215 59 216 67 217 49 218 59 219 80 220 68 221 61 222 62 223 61 224 59 225 66 226 68 227 39 228 49 229 55 230 46 231 53 232 50 233 44 234 41 235 44 236 47 237 48 238 35 239 34 240 27 241 41 242 35 243 41 244 42 245 28 246 32 247 25 248 33 249 37 250 1237