#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01287/HGDP01287.cram --algo AlignmentStat HGDP/HGDP01287/QCmetrics/HGDP01287.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	423122267	423122267	1.000000	0	422692078	0.998983	63207901699	398286775	59828706633	58714094643	0.000000	0.004569	0.003961	0.000219	151.000000	421334597	0.996788	0	0.499881	0.018050	0.000003	
SECOND_OF_PAIR	423122267	423122267	1.000000	0	421366677	0.995851	62029140515	396142155	58806699523	55500499647	0.000000	0.009799	0.009152	0.000207	151.000000	421334597	0.999924	0	0.499652	0.019304	0.000779	
PAIR	846244534	846244534	1.000000	0	844058755	0.997417	125237042214	794428930	118635406156	114214594290	0.000000	0.007159	0.006534	0.000213	151.000000	842669194	0.998354	0	0.499767	0.018676	0.000391