#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01288/HGDP01288.cram --algo AlignmentStat HGDP/HGDP01288/QCmetrics/HGDP01288.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454685482	454685482	1.000000	0	453372925	0.997113	67716925477	423775350	63617063571	62305585055	0.000000	0.004875	0.004166	0.000220	151.000000	451804724	0.996541	0	0.499886	0.019756	0.000004	
SECOND_OF_PAIR	454685482	454685482	1.000000	0	451857277	0.993780	66317353091	421333582	62422772213	58744609547	0.000000	0.010355	0.009601	0.000209	151.000000	451804724	0.999884	0	0.499586	0.021609	0.002594	
PAIR	909370964	909370964	1.000000	0	905230202	0.995447	134034278568	845108932	126039835784	121050194602	0.000000	0.007586	0.006858	0.000215	151.000000	903609448	0.998210	0	0.499736	0.020681	0.001299