#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01289/HGDP01289.cram --algo AlignmentStat HGDP/HGDP01289/QCmetrics/HGDP01289.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	412877837	412877837	1.000000	0	412394462	0.998829	61611613808	384622781	57753071839	56595034772	0.000000	0.004752	0.003988	0.000222	151.000000	411095760	0.996851	0	0.499964	0.020448	0.000004	
SECOND_OF_PAIR	412877837	412877837	1.000000	0	411129489	0.995765	60371648175	382587288	56693793963	53422102650	0.000000	0.010003	0.009187	0.000212	151.000000	411095760	0.999918	0	0.499526	0.022353	0.000924	
PAIR	825755674	825755674	1.000000	0	823523951	0.997297	121983261983	767210069	114446865802	110017137422	0.000000	0.007351	0.006563	0.000217	151.000000	822191520	0.998382	0	0.499745	0.021399	0.000464