#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01290/HGDP01290.cram --algo AlignmentStat HGDP/HGDP01290/QCmetrics/HGDP01290.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398038659	398038659	1.000000	0	397406385	0.998412	59377580679	371531533	55786353885	54679919922	0.000000	0.004716	0.004002	0.000221	151.000000	396051750	0.996591	0	0.499835	0.019515	0.000005	
SECOND_OF_PAIR	398038659	398038659	1.000000	0	396090683	0.995106	58219831494	369505203	54791432775	51619093890	0.000000	0.010149	0.009392	0.000211	151.000000	396051750	0.999902	0	0.499653	0.020925	0.001256	
PAIR	796077318	796077318	1.000000	0	793497068	0.996759	117597412173	741036736	110577786660	106299013812	0.000000	0.007405	0.006673	0.000216	151.000000	792103500	0.998244	0	0.499744	0.020218	0.000631