#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01293/HGDP01293.cram --algo AlignmentStat HGDP/HGDP01293/QCmetrics/HGDP01293.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430888354	430888354	1.000000	0	430343067	0.998735	64344467791	402591163	60485883478	59381401822	0.000000	0.004544	0.003844	0.000221	151.000000	428906484	0.996662	0	0.499869	0.019389	0.000005	
SECOND_OF_PAIR	430888354	430888354	1.000000	0	428941827	0.995483	63077805824	400356965	59402729790	56103554826	0.000000	0.009748	0.008993	0.000211	151.000000	428906484	0.999918	0	0.499596	0.021322	0.001020	
PAIR	861776708	861776708	1.000000	0	859284894	0.997109	127422273615	802948128	119888613268	115484956648	0.000000	0.007120	0.006395	0.000216	151.000000	857812968	0.998287	0	0.499733	0.020354	0.000512