#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01294/HGDP01294.cram --algo AlignmentStat HGDP/HGDP01294/QCmetrics/HGDP01294.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	441447802	441447802	1.000000	0	440985698	0.998953	65904636621	412221579	61925221407	60719702397	0.000000	0.004869	0.004108	0.000226	151.000000	439446337	0.996509	0	0.499861	0.021141	0.000003	
SECOND_OF_PAIR	441447802	441447802	1.000000	0	439482960	0.995549	64702888409	409902090	60889059725	57564892846	0.000000	0.009716	0.008912	0.000216	151.000000	439446337	0.999917	0	0.499515	0.022447	0.000824	
PAIR	882895604	882895604	1.000000	0	880468658	0.997251	130607525030	822123669	122814281132	118284595243	0.000000	0.007270	0.006490	0.000221	151.000000	878892674	0.998210	0	0.499688	0.021793	0.000414