#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01295/HGDP01295.cram --algo AlignmentStat HGDP/HGDP01295/QCmetrics/HGDP01295.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	445263729	445263729	1.000000	0	444717667	0.998774	66478548399	416956193	62626048447	61448017283	0.000000	0.004602	0.003924	0.000220	151.000000	443472381	0.997200	0	0.499977	0.018833	0.000003	
SECOND_OF_PAIR	445263729	445263729	1.000000	0	443509031	0.996059	65287060944	414925217	61614687519	58358757148	0.000000	0.009373	0.008640	0.000209	151.000000	443472381	0.999917	0	0.499533	0.020399	0.001003	
PAIR	890527458	890527458	1.000000	0	888226698	0.997416	131765609343	831881410	124240735966	119806774431	0.000000	0.006966	0.006263	0.000215	151.000000	886944762	0.998557	0	0.499755	0.019615	0.000503