#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01295/HGDP01295.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01295/QCmetrics/HGDP01295.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 16.413 5.2019 16 3 0 0.22272 0.0013756 0.027807 0.0028217 5.8562e-05 0.25478 0.99771 0.99093 0.94326 0.65415 0.23099 0.042131 0.0080863 0.0025489 0.0012496 0.0006457 0.00038146 0.00025788 0.00018387 0.00013243 0.99197 21 coverage high_quality_coverage_count 0 349004 1 248640 2 230453 3 251771 4 299899 5 416601 6 660460 7 1128124 8 1919880 9 3126310 10 4758258 11 6749847 12 8904722 13 10955175 14 12609429 15 13668411 16 13978797 17 13511560 18 12385378 19 10824325 20 9013609 21 7209823 22 5523132 23 4078298 24 2903633 25 2002959 26 1346754 27 886939 28 572448 29 369660 30 238693 31 157592 32 109222 33 80308 34 61819 35 50752 36 42877 37 37732 38 33161 39 30160 40 27820 41 25219 42 23177 43 21008 44 19631 45 18406 46 17259 47 16146 48 14885 49 14087 50 13042 51 12072 52 11001 53 9994 54 9118 55 8709 56 8040 57 7231 58 6570 59 6091 60 5603 61 5252 62 4839 63 4498 64 4145 65 3839 66 3327 67 3087 68 2874 69 2730 70 2422 71 2328 72 2238 73 2061 74 1914 75 1812 76 1722 77 1490 78 1420 79 1391 80 1427 81 1241 82 1152 83 1140 84 1131 85 1130 86 1046 87 1042 88 1010 89 940 90 932 91 888 92 850 93 864 94 802 95 702 96 733 97 684 98 713 99 657 100 666 101 670 102 623 103 636 104 605 105 571 106 630 107 562 108 547 109 517 110 483 111 490 112 466 113 407 114 443 115 398 116 404 117 380 118 362 119 370 120 265 121 311 122 269 123 266 124 251 125 247 126 212 127 198 128 172 129 182 130 176 131 181 132 171 133 144 134 138 135 152 136 119 137 113 138 125 139 118 140 121 141 100 142 101 143 109 144 106 145 106 146 112 147 94 148 116 149 95 150 81 151 90 152 79 153 65 154 66 155 68 156 54 157 68 158 61 159 63 160 63 161 52 162 61 163 47 164 58 165 58 166 51 167 55 168 38 169 46 170 33 171 49 172 44 173 48 174 55 175 56 176 48 177 55 178 45 179 45 180 67 181 62 182 61 183 48 184 50 185 56 186 54 187 50 188 60 189 42 190 40 191 38 192 39 193 33 194 30 195 34 196 32 197 29 198 22 199 19 200 20 201 27 202 25 203 20 204 30 205 28 206 21 207 26 208 26 209 27 210 28 211 21 212 23 213 15 214 19 215 16 216 24 217 23 218 25 219 22 220 25 221 24 222 29 223 20 224 18 225 29 226 31 227 22 228 34 229 27 230 31 231 31 232 25 233 27 234 29 235 30 236 27 237 27 238 32 239 18 240 14 241 15 242 26 243 23 244 18 245 15 246 17 247 14 248 12 249 16 250 1304