#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01296/HGDP01296.cram --algo AlignmentStat HGDP/HGDP01296/QCmetrics/HGDP01296.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	407377737	407377737	1.000000	0	406186203	0.997075	60660915426	379835290	57021168748	55859197353	0.000000	0.004860	0.004141	0.000223	151.000000	404948766	0.996954	0	0.499982	0.020123	0.000003	
SECOND_OF_PAIR	407377737	407377737	1.000000	0	404995592	0.994152	59502115879	377840565	56030278375	52830371481	0.000000	0.010087	0.009326	0.000212	151.000000	404948766	0.999884	0	0.499466	0.021979	0.002639	
PAIR	814755474	814755474	1.000000	0	811181795	0.995614	120163031305	757675855	113051447123	108689568834	0.000000	0.007448	0.006710	0.000217	151.000000	809897532	0.998417	0	0.499724	0.021049	0.001321