#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01299/HGDP01299.cram --algo AlignmentStat HGDP/HGDP01299/QCmetrics/HGDP01299.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364728818	364728818	1.000000	0	364219851	0.998605	54224951656	339997000	50821839470	48452661911	0.000000	0.006144	0.005471	0.000211	151.000000	361028205	0.991237	0	0.496392	0.023506	0.000068	
SECOND_OF_PAIR	364728818	364728818	1.000000	0	361049720	0.989913	53317452381	336720365	49957948247	46055478909	0.000000	0.009361	0.008685	0.000210	151.000000	361028205	0.999940	0	0.496427	0.024382	0.000064	
PAIR	729457636	729457636	1.000000	0	725269571	0.994259	107542404037	676717365	100779787717	94508140820	0.000000	0.007739	0.007064	0.000210	151.000000	722056410	0.995570	0	0.496410	0.023942	0.000066