#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01301/HGDP01301.cram --algo AlignmentStat HGDP/HGDP01301/QCmetrics/HGDP01301.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378078662	378078662	1.000000	0	377863348	0.999431	56517588857	353347544	53079100040	51964973602	0.000000	0.004704	0.003984	0.000220	151.000000	376260574	0.995758	0	0.500046	0.019421	0.000001	
SECOND_OF_PAIR	378078662	378078662	1.000000	0	376286544	0.995260	55305365179	351108512	52027884040	48990627024	0.000000	0.010123	0.009366	0.000213	151.000000	376260574	0.999931	0	0.499446	0.020441	0.000400	
PAIR	756157324	756157324	1.000000	0	754149892	0.997345	111822954036	704456056	105106984080	100955600626	0.000000	0.007384	0.006648	0.000216	151.000000	752521148	0.997840	0	0.499746	0.019930	0.000201