#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01302/HGDP01302.cram --algo AlignmentStat HGDP/HGDP01302/QCmetrics/HGDP01302.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	437438622	437438622	1.000000	0	437195391	0.999444	65312594894	407064668	61144649850	59711113645	0.000000	0.005063	0.004249	0.000225	151.000000	434477089	0.993782	0	0.500052	0.021558	0.000002	
SECOND_OF_PAIR	437438622	437438622	1.000000	0	434506394	0.993297	63605269805	403483960	59674343635	55974813188	0.000000	0.010896	0.010059	0.000216	151.000000	434477089	0.999933	0	0.499414	0.023011	0.000387	
PAIR	874877244	874877244	1.000000	0	871701785	0.996370	128917864699	810548628	120818993485	115685926833	0.000000	0.007941	0.007118	0.000220	151.000000	868954178	0.996848	0	0.499734	0.022283	0.000195