#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01309/HGDP01309.cram --algo AlignmentStat HGDP/HGDP01309/QCmetrics/HGDP01309.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371626611	371626611	1.000000	0	371477526	0.999599	55513245125	347161594	52152175016	50867504628	0.000000	0.005001	0.004224	0.000225	151.000000	370062272	0.996190	0	0.500006	0.021181	0.000001	
SECOND_OF_PAIR	371626611	371626611	1.000000	0	370083581	0.995848	54352959278	345070443	51142029394	47939256770	0.000000	0.010337	0.009551	0.000215	151.000000	370062272	0.999942	0	0.499416	0.022139	0.000259	
PAIR	743253222	743253222	1.000000	0	741561107	0.997723	109866204403	692232037	103294204410	98806761398	0.000000	0.007641	0.006861	0.000220	151.000000	740124544	0.998063	0	0.499711	0.021659	0.000130