#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01310/HGDP01310.cram --algo AlignmentStat HGDP/HGDP01310/QCmetrics/HGDP01310.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	426804016	426804016	1.000000	0	426502397	0.999293	63713321811	398652347	59865717310	58652235970	0.000000	0.004724	0.003994	0.000221	151.000000	425001350	0.996481	0	0.499917	0.019743	0.000002	
SECOND_OF_PAIR	426804016	426804016	1.000000	0	425031277	0.995846	62380044638	396349915	58720226614	55208859225	0.000000	0.010240	0.009471	0.000211	151.000000	425001350	0.999930	0	0.499573	0.021183	0.000481	
PAIR	853608032	853608032	1.000000	0	851533674	0.997570	126093366449	795002262	118585943924	113861095195	0.000000	0.007453	0.006706	0.000216	151.000000	850002700	0.998202	0	0.499746	0.020462	0.000241