#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01316/HGDP01316.cram --algo AlignmentStat HGDP/HGDP01316/QCmetrics/HGDP01316.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	527412983	527412983	1.000000	0	526818235	0.998872	78762523941	494752001	74335618574	72926272791	0.000000	0.004683	0.004069	0.000220	151.000000	525219288	0.996965	0	0.499918	0.018755	0.000004	
SECOND_OF_PAIR	527412983	527412983	1.000000	0	525257225	0.995913	77260879088	492200370	73042707127	68853874752	0.000000	0.010376	0.009740	0.000208	151.000000	525219288	0.999928	0	0.499618	0.020338	0.000866	
PAIR	1054825966	1054825966	1.000000	0	1052075460	0.997392	156023403029	986952371	147378325701	141780147543	0.000000	0.007502	0.006880	0.000214	151.000000	1050438576	0.998444	0	0.499768	0.019545	0.000435