#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01317/HGDP01317.cram --algo AlignmentStat HGDP/HGDP01317/QCmetrics/HGDP01317.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	418778040	418778040	1.000000	0	417624870	0.997246	62417571925	390386203	58635400064	57580557473	0.000000	0.004589	0.003871	0.000224	151.000000	416466893	0.997227	0	0.499986	0.020261	0.000005	
SECOND_OF_PAIR	418778040	418778040	1.000000	0	416513311	0.994592	61240334264	388439242	57641830614	54608735365	0.000000	0.009443	0.008665	0.000215	151.000000	416466893	0.999889	0	0.499490	0.022453	0.001606	
PAIR	837556080	837556080	1.000000	0	834138181	0.995919	123657906189	778825445	116277230678	112189292838	0.000000	0.006993	0.006247	0.000219	151.000000	832933786	0.998556	0	0.499738	0.021356	0.000805