#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01321/HGDP01321.cram --algo AlignmentStat HGDP/HGDP01321/QCmetrics/HGDP01321.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	439113729	439113729	1.000000	0	438562705	0.998745	65488464318	409100153	61413911613	60179414379	0.000000	0.004846	0.004116	0.000222	151.000000	436743760	0.995852	0	0.499957	0.020248	0.000002	
SECOND_OF_PAIR	439113729	439113729	1.000000	0	436779141	0.994683	63972338932	406340971	60107086147	56277463202	0.000000	0.011074	0.010309	0.000210	151.000000	436743760	0.999919	0	0.499483	0.022246	0.001021	
PAIR	878227458	878227458	1.000000	0	875341846	0.996714	129460803250	815441124	121520997760	116456877581	0.000000	0.007923	0.007179	0.000216	151.000000	873487520	0.997882	0	0.499721	0.021245	0.000511