#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01322/HGDP01322.cram --algo AlignmentStat HGDP/HGDP01322/QCmetrics/HGDP01322.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	453758822	453758822	1.000000	0	453503057	0.999436	67751408909	424524456	63749483697	62460389481	0.000000	0.004699	0.003984	0.000221	151.000000	451767062	0.996172	0	0.499883	0.019731	0.000001	
SECOND_OF_PAIR	453758822	453758822	1.000000	0	451797371	0.995677	66258750768	421903413	62449018695	58614857341	0.000000	0.010485	0.009739	0.000210	151.000000	451767062	0.999933	0	0.499604	0.021216	0.000363	
PAIR	907517644	907517644	1.000000	0	905300428	0.997557	134010159677	846427869	126198502392	121075246822	0.000000	0.007560	0.006832	0.000216	151.000000	903534124	0.998049	0	0.499744	0.020472	0.000182