#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01326/HGDP01326.cram --algo AlignmentStat HGDP/HGDP01326/QCmetrics/HGDP01326.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436554712	436554712	1.000000	0	436177422	0.999136	65225674509	411922073	61862182942	60656607242	0.000000	0.004555	0.003950	0.000216	151.000000	434843807	0.996942	0	0.499871	0.017416	0.000002	
SECOND_OF_PAIR	436554712	436554712	1.000000	0	434879843	0.996163	64055902235	409846409	60830941568	57447143744	0.000000	0.009686	0.009036	0.000207	151.000000	434843807	0.999917	0	0.499677	0.018756	0.000563	
PAIR	873109424	873109424	1.000000	0	871057265	0.997650	129281576744	821768482	122693124510	118103750986	0.000000	0.007097	0.006472	0.000212	151.000000	869687614	0.998428	0	0.499774	0.018085	0.000283