#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01328/HGDP01328.cram --algo AlignmentStat HGDP/HGDP01328/QCmetrics/HGDP01328.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	447492563	447492563	1.000000	0	447194039	0.999333	66792199244	417027856	62619733843	61334877187	0.000000	0.004849	0.004066	0.000223	151.000000	445400826	0.995990	0	0.499869	0.020214	0.000002	
SECOND_OF_PAIR	447492563	447492563	1.000000	0	445432679	0.995397	65240366169	414355477	61283003956	57362869420	0.000000	0.010941	0.010121	0.000212	151.000000	445400826	0.999928	0	0.499576	0.021664	0.000436	
PAIR	894985126	894985126	1.000000	0	892626718	0.997365	132032565413	831383333	123902737799	118697746607	0.000000	0.007859	0.007061	0.000217	151.000000	890801652	0.997955	0	0.499723	0.020938	0.000219