#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01329/HGDP01329.cram --algo AlignmentStat HGDP/HGDP01329/QCmetrics/HGDP01329.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	644440247	644440247	1.000000	0	644084435	0.999448	96290890561	605298918	90902621052	89095783360	0.000000	0.004650	0.004010	0.000218	151.000000	641820606	0.996485	0	0.499920	0.018149	0.000001	
SECOND_OF_PAIR	644440247	644440247	1.000000	0	641867901	0.996008	94386679581	601881699	89232868147	83856939956	0.000000	0.010382	0.009704	0.000208	151.000000	641820606	0.999926	0	0.499595	0.019381	0.000272	
PAIR	1288880494	1288880494	1.000000	0	1285952336	0.997728	190677570142	1207180617	180135489199	172952723316	0.000000	0.007487	0.006830	0.000213	151.000000	1283641212	0.998203	0	0.499758	0.018764	0.000136