#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01330/HGDP01330.cram --algo AlignmentStat HGDP/HGDP01330/QCmetrics/HGDP01330.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	396767840	396767840	1.000000	0	396624674	0.999639	59315320335	371107795	55770333627	54824774711	0.000000	0.004479	0.003761	0.000220	151.000000	395473638	0.997098	0	0.499973	0.019265	0.000001	
SECOND_OF_PAIR	396767840	396767840	1.000000	0	395499167	0.996802	58264226048	369259003	54877954857	52081575944	0.000000	0.009512	0.008740	0.000211	151.000000	395473638	0.999935	0	0.499510	0.021060	0.000152	
PAIR	793535680	793535680	1.000000	0	792123841	0.998221	117579546383	740366798	110648288484	106906350655	0.000000	0.006973	0.006230	0.000215	151.000000	790947276	0.998515	0	0.499742	0.020161	0.000076