#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01331/HGDP01331.cram --algo AlignmentStat HGDP/HGDP01331/QCmetrics/HGDP01331.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390055946	390055946	1.000000	0	389926283	0.999668	58278018766	363714006	54652903214	53613830133	0.000000	0.004892	0.004095	0.000225	151.000000	388752396	0.996989	0	0.499879	0.020471	0.000001	
SECOND_OF_PAIR	390055946	390055946	1.000000	0	388775994	0.996719	57188885130	361849809	53733336024	50671584833	0.000000	0.010514	0.009685	0.000213	151.000000	388752396	0.999939	0	0.499586	0.021662	0.000141	
PAIR	780111892	780111892	1.000000	0	778702277	0.998193	115466903896	725563815	108386239238	104285414966	0.000000	0.007676	0.006866	0.000219	151.000000	777504792	0.998462	0	0.499733	0.021066	0.000071