#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01332/HGDP01332.cram --algo AlignmentStat HGDP/HGDP01332/QCmetrics/HGDP01332.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427983373	427983373	1.000000	0	427639934	0.999198	63899120600	399815177	60062292020	58953601459	0.000000	0.004598	0.003864	0.000227	151.000000	426217180	0.996673	0	0.499928	0.021074	0.000003	
SECOND_OF_PAIR	427983373	427983373	1.000000	0	426251697	0.995954	62616487729	397570934	58971232058	55647838916	0.000000	0.009874	0.009101	0.000215	151.000000	426217180	0.999919	0	0.499535	0.022967	0.000538	
PAIR	855966746	855966746	1.000000	0	853891631	0.997576	126515608329	797386111	119033524078	114601440375	0.000000	0.007209	0.006459	0.000221	151.000000	852434360	0.998293	0	0.499732	0.022019	0.000270