#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01332/HGDP01332.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01332/QCmetrics/HGDP01332.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 15.197 5.1352 15 3 0 0.24288 0.0015938 0.028666 0.0022963 4.5811e-05 0.27548 0.99813 0.99079 0.91109 0.54227 0.15117 0.024009 0.006154 0.0024912 0.0012934 0.00074591 0.00046192 0.0003012 0.00021118 0.00015752 0.99046 20 coverage high_quality_coverage_count 0 284254 1 203741 2 221817 3 284533 4 406453 5 659329 6 1143234 7 1984681 8 3282562 9 5053406 10 7204187 11 9514361 12 11686121 13 13378970 14 14320274 15 14417099 16 13683873 17 12315489 18 10517597 19 8556667 20 6659895 21 4971858 22 3575054 23 2474341 24 1662414 25 1090543 26 702948 27 449101 28 286966 29 186462 30 126219 31 91025 32 69292 33 55206 34 46604 35 41119 36 36703 37 33547 38 30138 39 27316 40 25084 41 22965 42 21468 43 19925 44 18654 45 17140 46 15910 47 14852 48 13612 49 12584 50 11766 51 10424 52 9550 53 8892 54 8244 55 7698 56 7218 57 6858 58 6582 59 6053 60 5583 61 5212 62 4892 63 4531 64 4327 65 4055 66 4082 67 3706 68 3493 69 3317 70 3066 71 2829 72 2634 73 2410 74 2381 75 2385 76 2313 77 2148 78 2283 79 1999 80 1881 81 1728 82 1635 83 1497 84 1380 85 1313 86 1169 87 1129 88 994 89 968 90 946 91 869 92 881 93 865 94 795 95 837 96 792 97 750 98 744 99 683 100 630 101 640 102 609 103 577 104 589 105 535 106 486 107 489 108 443 109 463 110 460 111 412 112 409 113 444 114 411 115 406 116 372 117 378 118 347 119 377 120 348 121 366 122 319 123 294 124 326 125 291 126 283 127 244 128 278 129 240 130 234 131 187 132 210 133 226 134 241 135 240 136 273 137 204 138 220 139 224 140 212 141 218 142 199 143 202 144 170 145 184 146 182 147 180 148 162 149 198 150 175 151 201 152 173 153 175 154 142 155 162 156 147 157 121 158 129 159 110 160 111 161 121 162 115 163 123 164 119 165 95 166 89 167 106 168 77 169 91 170 77 171 96 172 73 173 83 174 92 175 97 176 78 177 87 178 81 179 83 180 92 181 75 182 69 183 73 184 71 185 63 186 62 187 66 188 62 189 58 190 62 191 46 192 49 193 42 194 62 195 52 196 56 197 44 198 39 199 48 200 51 201 36 202 51 203 42 204 52 205 40 206 32 207 29 208 28 209 28 210 31 211 25 212 25 213 29 214 41 215 28 216 26 217 28 218 28 219 34 220 26 221 26 222 29 223 28 224 24 225 21 226 21 227 15 228 26 229 17 230 19 231 21 232 21 233 20 234 10 235 23 236 24 237 20 238 20 239 20 240 17 241 22 242 20 243 19 244 17 245 19 246 25 247 27 248 24 249 21 250 1383