#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01334/HGDP01334.cram --algo AlignmentStat HGDP/HGDP01334/QCmetrics/HGDP01334.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454042021	454042021	1.000000	0	453821033	0.999513	67914103921	428275542	64344129495	63094752005	0.000000	0.004562	0.004039	0.000211	151.000000	452230911	0.996496	0	0.499958	0.016487	0.000001	
SECOND_OF_PAIR	454042021	454042021	1.000000	0	452260190	0.996076	66631930017	425808746	63215564312	59560999464	0.000000	0.009863	0.009280	0.000201	151.000000	452230911	0.999935	0	0.499507	0.017787	0.000259	
PAIR	908084042	908084042	1.000000	0	906081223	0.997794	134546033938	854084288	127559693807	122655751469	0.000000	0.007187	0.006636	0.000206	151.000000	904461822	0.998213	0	0.499733	0.017136	0.000130