#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01337/HGDP01337.cram --algo AlignmentStat HGDP/HGDP01337/QCmetrics/HGDP01337.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427957141	427957141	1.000000	0	427772611	0.999569	63965685384	399073344	59977345924	58974605086	0.000000	0.004526	0.003782	0.000220	151.000000	426474814	0.996966	0	0.499926	0.020075	0.000001	
SECOND_OF_PAIR	427957141	427957141	1.000000	0	426502985	0.996602	62780773361	396976520	58990057861	55980407128	0.000000	0.009602	0.008808	0.000210	151.000000	426474814	0.999934	0	0.499581	0.021517	0.000222	
PAIR	855914282	855914282	1.000000	0	854275596	0.998085	126746458745	796049864	118967403785	114955012214	0.000000	0.007040	0.006274	0.000215	151.000000	852949628	0.998448	0	0.499754	0.020795	0.000112