#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01339/HGDP01339.cram --algo AlignmentStat HGDP/HGDP01339/QCmetrics/HGDP01339.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370936418	370936418	1.000000	0	370496818	0.998815	55350825514	344609209	51753902990	50488502724	0.000000	0.005102	0.004335	0.000227	151.000000	368870008	0.995609	0	0.499992	0.021581	0.000001	
SECOND_OF_PAIR	370936418	370936418	1.000000	0	368891114	0.994486	54072832604	342260888	50661028658	47366983564	0.000000	0.010861	0.010068	0.000216	151.000000	368870008	0.999943	0	0.499441	0.022741	0.000285	
PAIR	741872836	741872836	1.000000	0	739387932	0.996650	109423658118	686870097	102414931648	97855486288	0.000000	0.007948	0.007170	0.000221	151.000000	737740016	0.997771	0	0.499717	0.022160	0.000143