#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01340/HGDP01340.cram --algo AlignmentStat HGDP/HGDP01340/QCmetrics/HGDP01340.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387165669	387165669	1.000000	0	386973516	0.999504	57873227692	362426518	54459789362	53440058466	0.000000	0.004706	0.004041	0.000216	151.000000	385919672	0.997277	0	0.499874	0.018433	0.000001	
SECOND_OF_PAIR	387165669	387165669	1.000000	0	385943732	0.996844	56832701281	360700452	53579730424	50636708821	0.000000	0.010111	0.009403	0.000206	151.000000	385919672	0.999938	0	0.499641	0.019688	0.000306	
PAIR	774331338	774331338	1.000000	0	772917248	0.998174	114705928973	723126970	108039519786	104076767287	0.000000	0.007384	0.006700	0.000211	151.000000	771839344	0.998605	0	0.499758	0.019060	0.000153