#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01341/HGDP01341.cram --algo AlignmentStat HGDP/HGDP01341/QCmetrics/HGDP01341.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430717930	430717930	1.000000	0	430252117	0.998919	64318305985	402896569	60538927313	59443546154	0.000000	0.004526	0.003825	0.000224	151.000000	428839198	0.996716	0	0.499946	0.020159	0.000002	
SECOND_OF_PAIR	430717930	430717930	1.000000	0	428875231	0.995722	63034894509	400665804	59446122075	56089423927	0.000000	0.009897	0.009156	0.000212	151.000000	428839198	0.999916	0	0.499519	0.021528	0.000814	
PAIR	861435860	861435860	1.000000	0	859127348	0.997320	127353200494	803562373	119985049388	115532970081	0.000000	0.007184	0.006466	0.000218	151.000000	857678396	0.998313	0	0.499733	0.020843	0.000408