#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01341/HGDP01341.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01341/QCmetrics/HGDP01341.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 15.342 5.2452 15 3 0 0.24859 0.0015439 0.028505 0.0019028 0.00012845 0.28067 0.9983 0.99214 0.91521 0.5495 0.15881 0.028272 0.0083365 0.0030918 0.0014073 0.00072252 0.00042805 0.00029043 0.00020777 0.00015033 0.99116 21 coverage high_quality_coverage_count 0 257983 1 184787 2 183228 3 231514 4 338590 5 583369 6 1060736 7 1898242 8 3197114 9 4962903 10 7109123 11 9428491 12 11595561 13 13273470 14 14221745 15 14330241 16 13631535 17 12287943 18 10552045 19 8628708 20 6754414 21 5078554 22 3681940 23 2581496 24 1759993 25 1174145 26 774397 27 509492 28 340205 29 234275 30 167475 31 126987 32 100151 33 82878 34 71220 35 62355 36 53945 37 48615 38 43928 39 40242 40 36980 41 33846 42 30231 43 28323 44 25911 45 23694 46 22043 47 20072 48 18385 49 16744 50 15136 51 13783 52 12639 53 11713 54 10661 55 9904 56 8814 57 7846 58 7090 59 6585 60 6170 61 5535 62 5273 63 4941 64 4647 65 4275 66 3953 67 3639 68 3400 69 2960 70 2828 71 2654 72 2408 73 2300 74 2139 75 1916 76 1817 77 1692 78 1624 79 1557 80 1475 81 1387 82 1337 83 1343 84 1269 85 1275 86 1137 87 1108 88 1109 89 1133 90 1065 91 1060 92 977 93 920 94 946 95 878 96 817 97 759 98 692 99 623 100 605 101 568 102 609 103 560 104 576 105 524 106 565 107 523 108 518 109 459 110 489 111 416 112 394 113 364 114 390 115 330 116 298 117 309 118 341 119 330 120 337 121 289 122 289 123 291 124 306 125 258 126 271 127 273 128 233 129 243 130 242 131 238 132 205 133 226 134 209 135 210 136 167 137 201 138 172 139 159 140 174 141 145 142 172 143 165 144 158 145 138 146 147 147 170 148 172 149 146 150 153 151 159 152 163 153 156 154 130 155 142 156 131 157 138 158 134 159 120 160 121 161 118 162 124 163 103 164 115 165 116 166 87 167 101 168 75 169 88 170 92 171 79 172 55 173 51 174 44 175 47 176 52 177 38 178 35 179 54 180 24 181 38 182 38 183 34 184 29 185 31 186 31 187 36 188 23 189 31 190 32 191 33 192 35 193 26 194 31 195 39 196 31 197 29 198 24 199 28 200 33 201 36 202 23 203 27 204 31 205 21 206 24 207 21 208 26 209 26 210 22 211 23 212 10 213 29 214 25 215 28 216 23 217 16 218 24 219 26 220 30 221 17 222 21 223 23 224 22 225 21 226 23 227 19 228 24 229 17 230 21 231 18 232 19 233 15 234 17 235 26 236 24 237 20 238 20 239 17 240 15 241 21 242 22 243 19 244 19 245 17 246 25 247 17 248 15 249 22 250 2550