#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01346/HGDP01346.cram --algo AlignmentStat HGDP/HGDP01346/QCmetrics/HGDP01346.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	458148576	458148576	1.000000	0	457694720	0.999009	68432230100	430558408	64671387251	63443774856	0.000000	0.004581	0.003950	0.000220	151.000000	456283424	0.996917	0	0.499960	0.018654	0.000002	
SECOND_OF_PAIR	458148576	458148576	1.000000	0	456318042	0.996004	67159912378	428293450	63575059765	60052020340	0.000000	0.009650	0.008980	0.000209	151.000000	456283424	0.999924	0	0.499567	0.020055	0.000733	
PAIR	916297152	916297152	1.000000	0	914012762	0.997507	135592142478	858851858	128246447016	123495795196	0.000000	0.007092	0.006443	0.000214	151.000000	912566848	0.998418	0	0.499763	0.019354	0.000368