#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01347/HGDP01347.cram --algo AlignmentStat HGDP/HGDP01347/QCmetrics/HGDP01347.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398536873	398536873	1.000000	0	398339422	0.999505	59527479239	372017286	55864091577	54775923679	0.000000	0.004655	0.003957	0.000221	151.000000	397271571	0.997319	0	0.499946	0.019917	0.000001	
SECOND_OF_PAIR	398536873	398536873	1.000000	0	397301328	0.996900	58483408032	370286450	54979769867	52108792907	0.000000	0.009370	0.008610	0.000213	151.000000	397271571	0.999925	0	0.499550	0.021348	0.000239	
PAIR	797073746	797073746	1.000000	0	795640750	0.998202	118010887271	742303736	110843861444	106884716586	0.000000	0.006992	0.006265	0.000217	151.000000	794543142	0.998620	0	0.499748	0.020632	0.000120