#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01348/HGDP01348.cram --algo AlignmentStat HGDP/HGDP01348/QCmetrics/HGDP01348.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	458472828	458472828	1.000000	0	458316945	0.999660	68517620281	427673207	64276331605	63188781053	0.000000	0.004529	0.003787	0.000224	151.000000	457105442	0.997357	0	0.499995	0.020520	0.000001	
SECOND_OF_PAIR	458472828	458472828	1.000000	0	457135775	0.997084	67370328039	425711595	63329016899	60374928243	0.000000	0.009018	0.008224	0.000215	151.000000	457105442	0.999934	0	0.499507	0.021886	0.000146	
PAIR	916945656	916945656	1.000000	0	915452720	0.998372	135887948320	853384802	127605348504	123563709296	0.000000	0.006754	0.005989	0.000220	151.000000	914210884	0.998643	0	0.499751	0.021202	0.000074