#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01351/HGDP01351.cram --algo AlignmentStat HGDP/HGDP01351/QCmetrics/HGDP01351.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433863383	433863383	1.000000	0	433616991	0.999432	64825009782	404110089	60723651811	59634924861	0.000000	0.004549	0.003766	0.000224	151.000000	432445455	0.997298	0	0.499924	0.020269	0.000001	
SECOND_OF_PAIR	433863383	433863383	1.000000	0	432473484	0.996796	63692826517	402206789	59784231500	56754108138	0.000000	0.009130	0.008286	0.000214	151.000000	432445455	0.999935	0	0.499522	0.021815	0.000373	
PAIR	867726766	867726766	1.000000	0	866090475	0.998114	128517836299	806316878	120507883311	116389032999	0.000000	0.006819	0.006008	0.000219	151.000000	864890910	0.998615	0	0.499723	0.021041	0.000187