#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01352/HGDP01352.cram --algo AlignmentStat HGDP/HGDP01352/QCmetrics/HGDP01352.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436361302	436361302	1.000000	0	436188825	0.999605	65206021786	408396290	61354881113	60160880287	0.000000	0.004783	0.004076	0.000223	151.000000	434728438	0.996652	0	0.499861	0.019431	0.000001	
SECOND_OF_PAIR	436361302	436361302	1.000000	0	434758177	0.996326	63974813502	406128667	60303975785	56868440962	0.000000	0.009912	0.009163	0.000212	151.000000	434728438	0.999932	0	0.499566	0.020628	0.000172	
PAIR	872722604	872722604	1.000000	0	870947002	0.997965	129180835288	814524957	121658856898	117029321249	0.000000	0.007323	0.006598	0.000218	151.000000	869456876	0.998289	0	0.499714	0.020029	0.000086