#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01356/HGDP01356.cram --algo AlignmentStat HGDP/HGDP01356/QCmetrics/HGDP01356.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421092017	421092017	1.000000	0	420962482	0.999692	62916731875	395367301	59368399517	58183502806	0.000000	0.004517	0.003923	0.000217	151.000000	419634268	0.996845	0	0.499986	0.017637	0.000001	
SECOND_OF_PAIR	421092017	421092017	1.000000	0	419660725	0.996601	61676560021	393283007	58297482330	55020665160	0.000000	0.009584	0.008949	0.000207	151.000000	419634268	0.999937	0	0.499597	0.019495	0.000106	
PAIR	842184034	842184034	1.000000	0	840623207	0.998147	124593291896	788650308	117665881847	113204167966	0.000000	0.007025	0.006413	0.000212	151.000000	839268536	0.998388	0	0.499792	0.018564	0.000053