#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01357/HGDP01357.cram --algo AlignmentStat HGDP/HGDP01357/QCmetrics/HGDP01357.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385907771	385907771	1.000000	0	384533032	0.996438	57525227627	364075539	54689837310	53348287274	0.000000	0.004903	0.004298	0.000205	151.000000	382869402	0.995674	0	0.500030	0.016726	0.000012	
SECOND_OF_PAIR	385907771	385907771	1.000000	0	382911355	0.992235	56043058581	361565719	53358556609	49280246145	0.000000	0.012107	0.011504	0.000195	151.000000	382869402	0.999890	0	0.499494	0.018300	0.003235	
PAIR	771815542	771815542	1.000000	0	767444387	0.994337	113568286208	725641258	108048393919	102628533419	0.000000	0.008458	0.007856	0.000200	151.000000	765738804	0.997778	0	0.499763	0.017511	0.001624