#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01358/HGDP01358.cram --algo AlignmentStat HGDP/HGDP01358/QCmetrics/HGDP01358.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	431688640	431688640	1.000000	0	430750215	0.997826	64305721476	402026975	60368876924	58926729007	0.000000	0.005266	0.004479	0.000223	151.000000	428956728	0.995836	0	0.499978	0.022181	0.000005	
SECOND_OF_PAIR	431688640	431688640	1.000000	0	428993221	0.993756	62633366246	399300232	58933371423	54436298948	1.000000	0.012567	0.011796	0.000208	151.000000	428956728	0.999915	0	0.499474	0.023455	0.001896	
PAIR	863377280	863377280	1.000000	0	859743436	0.995791	126939087722	801327207	119302248347	113363027955	0.000000	0.008868	0.008093	0.000216	151.000000	857913456	0.997871	0	0.499726	0.022817	0.000951