#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01360/HGDP01360.cram --algo AlignmentStat HGDP/HGDP01360/QCmetrics/HGDP01360.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	429901013	429901013	1.000000	0	426248425	0.991504	63617497025	399022096	59870388338	58213549133	0.000000	0.005497	0.004740	0.000216	151.000000	424162429	0.995106	0	0.500032	0.020566	0.000024	
SECOND_OF_PAIR	429901013	429901013	1.000000	0	424253082	0.986862	61809248980	395941159	58293793421	53524779773	1.000000	0.012990	0.012248	0.000203	151.000000	424162429	0.999786	0	0.499434	0.021948	0.007876	
PAIR	859802026	859802026	1.000000	0	850501507	0.989183	125426746005	794963255	118164181759	111738328906	0.000000	0.009189	0.008444	0.000210	151.000000	848324858	0.997441	0	0.499734	0.021256	0.003950